Assembly
ASM5104821v1
BioProject PRJNA1067801 · BioSample SAMN39551542
GENOME-RESOLVED EVIDENCE
GCA_051048215.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3257211 bp · GC 28.500%
Completeness 97.030% · contamination 3.950%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCVY792_06545 | XWT35736.1 | OG0000061 | CP143091.1:1502750–1504102 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhVY792_00670 | XWT34616.1 | OG0000131 | CP143091.1:151378–152331 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBVY792_06535 | XWT35734.1 | OG0000212 | CP143091.1:1501825–1502316 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdVY792_12820 | XWT34157.1 | OG0000229 | CP143091.1:2864222–2865070 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlVY792_12065 | XWT34034.1 | OG0000234 | CP143091.1:2724346–2725524 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZVY792_06540 | XWT35735.1 | OG0000785 | CP143091.1:1502319–1502738 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEVY792_14120 | XWT34387.1 | OG0001124 | CP143091.1:3121807–3124404 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPVY792_01715 | XWT34809.1 | OG0001228 | CP143091.1:393993–395516 + | L-lactate permease [Clostridium perfringens] |
| rnfAVY792_06495 | XWT35726.1 | OG0001328 | CP143091.1:1495184–1495759 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtVY792_12840 | XWT34161.1 | OG0001394 | CP143091.1:2868197–2868979 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtVY792_00630 | XWT34608.1 | OG0001639 | CP143091.1:140720–141496 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.