Assembly
ASM5105797v1
BioProject PRJNA1178437 · BioSample SAMN44473494
GENOME-RESOLVED EVIDENCE
GCA_051057975.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3319936 bp · GC 28.500%
Completeness 96.850% · contamination 2.390%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACH2FY_06510 | XWU60430.1 | OG0000061 | CP173032.1:1484553–1485905 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACH2FY_00670 | XWU59316.1 | OG0000131 | CP173032.1:151438–152391 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACH2FY_06500 | XWU60428.1 | OG0000212 | CP173032.1:1483628–1484119 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACH2FY_12810 | XWU58861.1 | OG0000229 | CP173032.1:2851893–2852741 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACH2FY_12105 | XWU58748.1 | OG0000234 | CP173032.1:2721109–2722287 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACH2FY_06505 | XWU60429.1 | OG0000785 | CP173032.1:1484122–1484541 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACH2FY_14095 | XWU59088.1 | OG0001124 | CP173032.1:3108678–3111275 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACH2FY_01785 | XWU59523.1 | OG0001228 | CP173032.1:415420–416943 + | L-lactate permease [Clostridium perfringens] |
| rnfAACH2FY_06460 | XWU60420.1 | OG0001328 | CP173032.1:1476987–1477562 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACH2FY_12830 | XWU58865.1 | OG0001394 | CP173032.1:2855868–2856650 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACH2FY_00630 | XWU59308.1 | OG0001639 | CP173032.1:140787–141563 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.