Assembly
ASM5154957v1
BioProject PRJNA1178821 · BioSample SAMN44498921
GENOME-RESOLVED EVIDENCE
GCA_051549575.1
Clostridium cochlearium · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 2398298 bp · GC 28.500%
Completeness 99.380% · contamination 0.160%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 0/1 | 0.000 | Partial/absent |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 1 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACIR03_11820 | XYA49826.1 | OG0000061 | CP173238.1:2353790–2355130 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium cochlearium] |
| ldhACIR03_08485 | XYA49234.1 | OG0000131 | CP173238.1:1691343–1692299 - | L-lactate dehydrogenase [Clostridium cochlearium] |
| accBACIR03_11830 | XYA49828.1 | OG0000212 | CP173238.1:2355582–2356037 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium cochlearium] |
| hbdACIR03_10275 | XYA49544.1 | OG0000229 | CP173238.1:2050055–2050903 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium cochlearium] |
| thlACIR03_00820 | XYA50011.1 | OG0000234 | CP173238.1:168142–169317 + | acetyl-CoA C-acetyltransferase [Clostridium cochlearium] |
| fabZACIR03_11825 | XYA49827.1 | OG0000785 | CP173238.1:2355138–2355566 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium cochlearium] |
| crtACIR03_10295 | XYA49548.1 | OG0001394 | CP173238.1:2053946–2054728 - | short-chain-enoyl-CoA hydratase [Clostridium cochlearium] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.