Assembly
ASM5205647v1
BioProject PRJNA1233162 · BioSample SAMN47257456
GENOME-RESOLVED EVIDENCE
GCA_052056475.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3297141 bp · GC 28.500%
Completeness 97.380% · contamination 1.930%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACN6AU_06660 | XYY63434.1 | OG0000061 | CP184246.1:1543212–1544564 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACN6AU_00680 | XYY62285.1 | OG0000131 | CP184246.1:152787–153740 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACN6AU_06650 | XYY63432.1 | OG0000212 | CP184246.1:1542287–1542778 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACN6AU_12795 | XYY61806.1 | OG0000229 | CP184246.1:2876200–2877048 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACN6AU_12185 | XYY61711.1 | OG0000234 | CP184246.1:2760096–2761274 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACN6AU_06655 | XYY63433.1 | OG0000785 | CP184246.1:1542781–1543200 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACN6AU_14200 | XYY62053.1 | OG0001124 | CP184246.1:3157319–3159916 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACN6AU_01780 | XYY62489.1 | OG0001228 | CP184246.1:411031–412554 + | L-lactate permease [Clostridium perfringens] |
| crtACN6AU_12815 | XYY61810.1 | OG0001394 | CP184246.1:2880175–2880957 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACN6AU_00640 | XYY62277.1 | OG0001639 | CP184246.1:142131–142907 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.