Assembly
ASM5205675v1
BioProject PRJNA1236527 · BioSample SAMN47393725
GENOME-RESOLVED EVIDENCE
GCA_052056755.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3170341 bp · GC 28.500%
Completeness 97.140% · contamination 1.840%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACOEWT_06375 | XYY72024.1 | OG0000061 | CP184750.1:1446931–1448283 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACOEWT_00680 | XYY70938.1 | OG0000131 | CP184750.1:153793–154746 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACOEWT_06365 | XYY72022.1 | OG0000212 | CP184750.1:1446006–1446497 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACOEWT_12470 | XYY70478.1 | OG0000229 | CP184750.1:2778312–2779160 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACOEWT_11865 | XYY70384.1 | OG0000234 | CP184750.1:2659988–2661166 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACOEWT_06370 | XYY72023.1 | OG0000785 | CP184750.1:1446500–1446919 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACOEWT_13770 | XYY70708.1 | OG0001124 | CP184750.1:3036040–3038637 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACOEWT_01795 | XYY71142.1 | OG0001228 | CP184750.1:406227–407750 + | L-lactate permease [Clostridium perfringens] |
| crtACOEWT_12490 | XYY70482.1 | OG0001394 | CP184750.1:2782287–2783069 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACOEWT_00640 | XYY70930.1 | OG0001639 | CP184750.1:143138–143914 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.