Assembly
ASM5224979v1
BioProject PRJNA1294857 · BioSample SAMN50128589
GENOME-RESOLVED EVIDENCE
GCA_052249795.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3385461 bp · GC 28.500%
Completeness 97.680% · contamination 5.180%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW96_08185 | XZH03561.1 | OG0000061 | CP198004.1:1735982–1737334 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW96_14015 | XZH04690.1 | OG0000131 | CP198004.1:3100044–3100997 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW96_08195 | XZH03563.1 | OG0000212 | CP198004.1:1737768–1738259 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW96_02085 | XZH05176.1 | OG0000229 | CP198004.1:411007–411855 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW96_02695 | XZH05271.1 | OG0000234 | CP198004.1:528417–529595 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW96_08190 | XZH03562.1 | OG0000785 | CP198004.1:1737346–1737765 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW96_00710 | XZH04933.1 | OG0001124 | CP198004.1:133166–135763 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW96_12905 | XZH04483.1 | OG0001228 | CP198004.1:2832581–2834104 - | L-lactate permease [Clostridium perfringens] |
| crtACSW96_02065 | XZH05172.1 | OG0001394 | CP198004.1:407098–407880 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW96_14075 | XZH04702.1 | OG0001639 | CP198004.1:3115703–3116479 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.