Assembly
ASM5224980v1
BioProject PRJNA1294857 · BioSample SAMN50128586
GENOME-RESOLVED EVIDENCE
GCA_052249805.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3359137 bp · GC 28.500%
Completeness 96.480% · contamination 4.080%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW93_07755 | XZH09191.1 | OG0000061 | CP198018.1:1639258–1640610 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW93_13615 | XZH07518.1 | OG0000131 | CP198018.1:3017154–3018107 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW93_07765 | XZH09193.1 | OG0000212 | CP198018.1:1641044–1641535 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW93_01380 | XZH07993.1 | OG0000229 | CP198018.1:273838–274686 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW93_02090 | XZH08106.1 | OG0000234 | CP198018.1:405724–406902 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW93_07760 | XZH09192.1 | OG0000785 | CP198018.1:1640622–1641041 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW93_00080 | XZH07763.1 | OG0001124 | CP198018.1:14740–17337 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW93_12535 | XZH07317.1 | OG0001228 | CP198018.1:2760718–2762241 - | L-lactate permease [Clostridium perfringens] |
| crtACSW93_01360 | XZH07989.1 | OG0001394 | CP198018.1:269929–270711 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW93_13655 | XZH07526.1 | OG0001639 | CP198018.1:3027986–3028762 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.