Assembly
ASM5224981v1
BioProject PRJNA1294857 · BioSample SAMN50128587
GENOME-RESOLVED EVIDENCE
GCA_052249815.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3313233 bp · GC 28.500%
Completeness 97.840% · contamination 3.130%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW94_08155 | XZH09400.1 | OG0000061 | CP198015.1:1709706–1711058 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW94_14225 | XZH10568.1 | OG0000131 | CP198015.1:3083337–3084290 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW94_08165 | XZH09402.1 | OG0000212 | CP198015.1:1711492–1711983 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW94_02070 | XZH11050.1 | OG0000229 | CP198015.1:399065–399913 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW94_02680 | XZH11145.1 | OG0000234 | CP198015.1:516152–517330 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW94_08160 | XZH09401.1 | OG0000785 | CP198015.1:1711070–1711489 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW94_00700 | XZH10807.1 | OG0001124 | CP198015.1:130532–133129 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW94_13150 | XZH10366.1 | OG0001228 | CP198015.1:2835444–2836967 - | L-lactate permease [Clostridium perfringens] |
| rnfAACSW94_08205 | XZH09410.1 | OG0001328 | CP198015.1:1718049–1718624 - | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACSW94_02050 | XZH11046.1 | OG0001394 | CP198015.1:395156–395938 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW94_14265 | XZH10576.1 | OG0001639 | CP198015.1:3094172–3094948 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.