Assembly
ASM5224983v1
BioProject PRJNA1294857 · BioSample SAMN50128556
GENOME-RESOLVED EVIDENCE
GCA_052249835.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3427019 bp · GC 28.500%
Completeness 97.930% · contamination 4.550%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW89_06585 | XZH18225.1 | OG0000061 | CP197945.1:1514387–1515739 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW89_00670 | XZH17086.1 | OG0000131 | CP197945.1:151632–152585 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW89_06575 | XZH18223.1 | OG0000212 | CP197945.1:1513462–1513953 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW89_13090 | XZH16628.1 | OG0000229 | CP197945.1:2907729–2908577 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW89_12480 | XZH16533.1 | OG0000234 | CP197945.1:2790252–2791430 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW89_06580 | XZH18224.1 | OG0000785 | CP197945.1:1513956–1514375 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW89_14390 | XZH16858.1 | OG0001124 | CP197945.1:3165013–3167610 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW89_01690 | XZH17276.1 | OG0001228 | CP197945.1:391367–392890 + | L-lactate permease [Clostridium perfringens] |
| rnfAACSW89_06535 | XZH18215.1 | OG0001328 | CP197945.1:1506821–1507396 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACSW89_13110 | XZH16632.1 | OG0001394 | CP197945.1:2911704–2912486 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW89_00630 | XZH17078.1 | OG0001639 | CP197945.1:140974–141750 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.