Assembly
ASM5224984v1
BioProject PRJNA1294857 · BioSample SAMN50128554
GENOME-RESOLVED EVIDENCE
GCA_052249845.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3091092 bp · GC 28.500%
Completeness 95.710% · contamination 3.280%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW87_06625 | XZH21146.1 | OG0000061 | CP197953.1:1471751–1473103 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW87_00985 | XZH20055.1 | OG0000131 | CP197953.1:203309–204262 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW87_06615 | XZH21144.1 | OG0000212 | CP197953.1:1470826–1471317 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW87_12575 | XZH19574.1 | OG0000229 | CP197953.1:2738177–2739025 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW87_11980 | XZH19482.1 | OG0000234 | CP197953.1:2624967–2626145 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW87_06620 | XZH21145.1 | OG0000785 | CP197953.1:1471320–1471739 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW87_13875 | XZH19804.1 | OG0001124 | CP197953.1:2994900–2997497 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW87_01950 | XZH20235.1 | OG0001228 | CP197953.1:425798–427321 + | L-lactate permease [Clostridium perfringens] |
| crtACSW87_12595 | XZH19578.1 | OG0001394 | CP197953.1:2742151–2742933 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW87_00925 | XZH20043.1 | OG0001639 | CP197953.1:187835–188611 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.