Assembly
ASM5224986v1
BioProject PRJNA1294857 · BioSample SAMN50128561
GENOME-RESOLVED EVIDENCE
GCA_052249865.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3715811 bp · GC 28.500%
Completeness 95.870% · contamination 7.940%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW9E_07715 | XZH27543.1 | OG0000061 | CP197910.1:1699962–1701314 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW9E_00885 | XZH26231.1 | OG0000131 | CP197910.1:188059–189012 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW9E_07705 | XZH27541.1 | OG0000212 | CP197910.1:1699037–1699528 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW9E_14205 | XZH25727.1 | OG0000229 | CP197910.1:3115318–3116166 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW9E_13555 | XZH25625.1 | OG0000234 | CP197910.1:2992340–2993518 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW9E_07710 | XZH27542.1 | OG0000785 | CP197910.1:1699531–1699950 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW9E_15505 | XZH25958.1 | OG0001124 | CP197910.1:3372679–3375276 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| crtACSW9E_14225 | XZH25731.1 | OG0001394 | CP197910.1:3119292–3120074 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW9E_00830 | XZH26220.1 | OG0001639 | CP197910.1:174317–175093 + | enoyl-CoA hydratase-related protein [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.