Assembly
ASM5224987v1
BioProject PRJNA1294857 · BioSample SAMN50128532
GENOME-RESOLVED EVIDENCE
GCA_052249875.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3554374 bp · GC 28.500%
Completeness 96.390% · contamination 4.840%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW8L_08595 | XZH31492.1 | OG0000061 | CP197741.1:1904822–1906174 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW8L_02590 | XZH33198.1 | OG0000131 | CP197741.1:516822–517775 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW8L_08585 | XZH31490.1 | OG0000212 | CP197741.1:1903897–1904388 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW8L_14840 | XZH32662.1 | OG0000229 | CP197741.1:3243961–3244809 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW8L_14150 | XZH32551.1 | OG0000234 | CP197741.1:3113077–3114255 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW8L_08590 | XZH31491.1 | OG0000785 | CP197741.1:1904391–1904810 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW8L_00825 | XZH32891.1 | OG0001124 | CP197741.1:155781–158378 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW8L_03695 | XZH33403.1 | OG0001228 | CP197741.1:771153–772676 + | L-lactate permease [Clostridium perfringens] |
| crtACSW8L_14860 | XZH32666.1 | OG0001394 | CP197741.1:3247936–3248718 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW8L_02550 | XZH33190.1 | OG0001639 | CP197741.1:506165–506941 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.