Assembly
ASM5224988v1
BioProject PRJNA1294857 · BioSample SAMN50128550
GENOME-RESOLVED EVIDENCE
GCA_052249885.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3813726 bp · GC 28.000%
Completeness 95.870% · contamination 9.570%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW83_08710 | XZH27963.1 | OG0000061 | CP197973.1:1847697–1849049 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW83_15545 | XZH29276.1 | OG0000131 | CP197973.1:3360006–3360959 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW83_08720 | XZH27965.1 | OG0000212 | CP197973.1:1849483–1849974 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW83_02130 | XZH29764.1 | OG0000229 | CP197973.1:414313–415161 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW83_02785 | XZH29865.1 | OG0000234 | CP197973.1:538426–539604 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW83_08715 | XZH27964.1 | OG0000785 | CP197973.1:1849061–1849480 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW83_00830 | XZH29533.1 | OG0001124 | CP197973.1:155203–157800 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| crtACSW83_02110 | XZH29760.1 | OG0001394 | CP197973.1:410405–411187 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW83_15600 | XZH29287.1 | OG0001639 | CP197973.1:3373925–3374701 - | enoyl-CoA hydratase-related protein [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.