Assembly
ASM5224989v1
BioProject PRJNA1294857 · BioSample SAMN50128549
GENOME-RESOLVED EVIDENCE
GCA_052249895.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3571005 bp · GC 28.500%
Completeness 97.710% · contamination 6.380%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW82_07735 | XZH37467.1 | OG0000061 | CP197729.1:1678720–1680072 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW82_00925 | XZH36159.1 | OG0000131 | CP197729.1:193900–194853 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW82_07725 | XZH37465.1 | OG0000212 | CP197729.1:1677795–1678286 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW82_14110 | XZH35633.1 | OG0000229 | CP197729.1:3050208–3051056 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW82_13390 | XZH35516.1 | OG0000234 | CP197729.1:2913511–2914689 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW82_07730 | XZH37466.1 | OG0000785 | CP197729.1:1678289–1678708 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW82_15490 | XZH35878.1 | OG0001124 | CP197729.1:3327413–3330010 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW82_02030 | XZH36364.1 | OG0001228 | CP197729.1:449316–450839 + | L-lactate permease [Clostridium perfringens] |
| crtACSW82_14130 | XZH35637.1 | OG0001394 | CP197729.1:3054183–3054965 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW82_00885 | XZH36151.1 | OG0001639 | CP197729.1:183246–184022 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.