Assembly
ASM5224990v1
BioProject PRJNA1294857 · BioSample SAMN50128548
GENOME-RESOLVED EVIDENCE
GCA_052249905.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3378976 bp · GC 28.500%
Completeness 96.380% · contamination 5.450%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW81_08275 | XZH37786.1 | OG0000061 | CP197735.1:1750229–1751581 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW81_14095 | XZH38913.1 | OG0000131 | CP197735.1:3103765–3104718 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW81_08285 | XZH37788.1 | OG0000212 | CP197735.1:1752015–1752506 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW81_02155 | XZH39406.1 | OG0000229 | CP197735.1:417292–418140 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW81_02765 | XZH39499.1 | OG0000234 | CP197735.1:533125–534303 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW81_08280 | XZH37787.1 | OG0000785 | CP197735.1:1751593–1752012 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW81_00855 | XZH39176.1 | OG0001124 | CP197735.1:158127–160724 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW81_12980 | XZH38705.1 | OG0001228 | CP197735.1:2844603–2846126 - | L-lactate permease [Clostridium perfringens] |
| crtACSW81_02135 | XZH39402.1 | OG0001394 | CP197735.1:413383–414165 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW81_14135 | XZH38921.1 | OG0001639 | CP197735.1:3114597–3115373 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.