Assembly
ASM5224991v1
BioProject PRJNA1294857 · BioSample SAMN50128545
GENOME-RESOLVED EVIDENCE
GCA_052249915.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3421379 bp · GC 28.500%
Completeness 97.530% · contamination 4.770%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW8Y_06700 | XZH43344.1 | OG0000061 | CP197749.1:1551890–1553242 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW8Y_00700 | XZH42191.1 | OG0000131 | CP197749.1:157161–158114 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW8Y_06690 | XZH43342.1 | OG0000212 | CP197749.1:1550965–1551456 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW8Y_12955 | XZH41696.1 | OG0000229 | CP197749.1:2905978–2906826 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW8Y_12235 | XZH41580.1 | OG0000234 | CP197749.1:2772966–2774144 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW8Y_06695 | XZH43343.1 | OG0000785 | CP197749.1:1551459–1551878 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW8Y_14335 | XZH41941.1 | OG0001124 | CP197749.1:3181415–3184012 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| crtACSW8Y_12975 | XZH41700.1 | OG0001394 | CP197749.1:2909953–2910735 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW8Y_00660 | XZH42183.1 | OG0001639 | CP197749.1:146507–147283 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.