Assembly
ASM5224992v1
BioProject PRJNA1294857 · BioSample SAMN50128546
GENOME-RESOLVED EVIDENCE
GCA_052249925.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3422974 bp · GC 28.500%
Completeness 97.530% · contamination 4.770%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW8Z_05180 | XZH46051.1 | OG0000061 | CP197744.1:1201570–1202922 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW8Z_14280 | XZH44896.1 | OG0000131 | CP197744.1:3132856–3133809 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW8Z_05170 | XZH46049.1 | OG0000212 | CP197744.1:1200645–1201136 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW8Z_11430 | XZH44402.1 | OG0000229 | CP197744.1:2555658–2556506 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW8Z_10710 | XZH44286.1 | OG0000234 | CP197744.1:2422646–2423824 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW8Z_05175 | XZH46050.1 | OG0000785 | CP197744.1:1201139–1201558 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW8Z_12810 | XZH44647.1 | OG0001124 | CP197744.1:2831095–2833692 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| crtACSW8Z_11450 | XZH44406.1 | OG0001394 | CP197744.1:2559633–2560415 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW8Z_14240 | XZH44888.1 | OG0001639 | CP197744.1:3122202–3122978 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.