Assembly
ASM5224993v1
BioProject PRJNA1294857 · BioSample SAMN50128535
GENOME-RESOLVED EVIDENCE
GCA_052249935.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3788500 bp · GC 28.000%
Completeness 97.340% · contamination 7.030%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW8O_11285 | XZH50678.1 | OG0000061 | CP197817.1:2387273–2388625 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW8O_02085 | XZH51938.1 | OG0000131 | CP197817.1:454050–455003 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW8O_11295 | XZH50680.1 | OG0000212 | CP197817.1:2389059–2389550 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW8O_04965 | XZH52435.1 | OG0000229 | CP197817.1:1043759–1044607 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW8O_05695 | XZH52553.1 | OG0000234 | CP197817.1:1178459–1179637 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW8O_11290 | XZH50679.1 | OG0000785 | CP197817.1:2388637–2389056 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW8O_03590 | XZH52191.1 | OG0001124 | CP197817.1:765338–767935 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW8O_01080 | XZH51753.1 | OG0001228 | CP197817.1:222131–223654 - | L-lactate permease [Clostridium perfringens] |
| crtACSW8O_04945 | XZH52431.1 | OG0001394 | CP197817.1:1039850–1040632 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW8O_02125 | XZH51945.1 | OG0001639 | CP197817.1:464881–465657 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.