Assembly
ASM5224994v1
BioProject PRJNA1294857 · BioSample SAMN50128534
GENOME-RESOLVED EVIDENCE
GCA_052249945.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3179277 bp · GC 28.500%
Completeness 94.080% · contamination 2.210%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW8N_06290 | XZH55997.1 | OG0000061 | CP197828.1:1424917–1426269 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW8N_00680 | XZH54947.1 | OG0000131 | CP197828.1:154554–155507 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW8N_06280 | XZH55995.1 | OG0000212 | CP197828.1:1423992–1424483 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW8N_12260 | XZH54476.1 | OG0000229 | CP197828.1:2729578–2730426 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW8N_11660 | XZH54384.1 | OG0000234 | CP197828.1:2612360–2613538 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW8N_06285 | XZH55996.1 | OG0000785 | CP197828.1:1424486–1424905 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW8N_13575 | XZH54708.1 | OG0001124 | CP197828.1:2991008–2993605 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW8N_01775 | XZH55143.1 | OG0001228 | CP197828.1:399378–400901 + | L-lactate permease [Clostridium perfringens] |
| crtACSW8N_12280 | XZH54480.1 | OG0001394 | CP197828.1:2733553–2734335 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW8N_00635 | XZH54938.1 | OG0001639 | CP197828.1:142626–143402 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.