Assembly
ASM5224996v1
BioProject PRJNA1294857 · BioSample SAMN50128538
GENOME-RESOLVED EVIDENCE
GCA_052249965.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3800595 bp · GC 28.000%
Completeness 97.340% · contamination 7.030%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW8R_09645 | XZH59802.1 | OG0000061 | CP197782.1:2081717–2083069 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW8R_03050 | XZH61479.1 | OG0000131 | CP197782.1:626519–627472 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW8R_09635 | XZH59800.1 | OG0000212 | CP197782.1:2080792–2081283 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW8R_00165 | XZH60983.1 | OG0000229 | CP197782.1:36915–37763 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW8R_15240 | XZH60867.1 | OG0000234 | CP197782.1:3290705–3291883 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW8R_09640 | XZH59801.1 | OG0000785 | CP197782.1:2081286–2081705 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW8R_01540 | XZH61227.1 | OG0001124 | CP197782.1:313587–316184 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW8R_04060 | XZH61665.1 | OG0001228 | CP197782.1:857868–859391 + | L-lactate permease [Clostridium perfringens] |
| crtACSW8R_00185 | XZH60987.1 | OG0001394 | CP197782.1:40890–41672 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW8R_03010 | XZH61471.1 | OG0001639 | CP197782.1:615865–616641 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.