Assembly
ASM5224997v1
BioProject PRJNA1294857 · BioSample SAMN50128544
GENOME-RESOLVED EVIDENCE
GCA_052249975.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3899126 bp · GC 28.000%
Completeness 96.380% · contamination 13.130%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 1/2 | 0.500 | Partial/absent |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW8X_08300 | XZH62970.1 | OG0000061 | CP197753.1:1758009–1759361 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW8X_14450 | XZH64144.1 | OG0000131 | CP197753.1:3158398–3159351 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW8X_08310 | XZH62972.1 | OG0000212 | CP197753.1:1759795–1760286 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW8X_02165 | XZH64638.1 | OG0000229 | CP197753.1:417371–418219 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW8X_02765 | XZH64732.1 | OG0000234 | CP197753.1:533066–534244 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW8X_08305 | XZH62971.1 | OG0000785 | CP197753.1:1759373–1759792 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW8X_00855 | XZH64408.1 | OG0001124 | CP197753.1:157932–160529 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| crtACSW8X_02145 | XZH64634.1 | OG0001394 | CP197753.1:413462–414244 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW8X_14490 | XZH64152.1 | OG0001639 | CP197753.1:3169229–3170005 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.