Assembly
ASM5224999v1
BioProject PRJNA1294857 · BioSample SAMN50128537
GENOME-RESOLVED EVIDENCE
GCA_052249995.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3828819 bp · GC 28.000%
Completeness 97.340% · contamination 7.760%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW8Q_07360 | XZH74996.1 | OG0000061 | CP197793.1:1623023–1624375 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW8Q_00760 | XZH73742.1 | OG0000131 | CP197793.1:167827–168780 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW8Q_07350 | XZH74994.1 | OG0000212 | CP197793.1:1622098–1622589 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW8Q_13685 | XZH73245.1 | OG0000229 | CP197793.1:2967041–2967889 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW8Q_12955 | XZH73128.1 | OG0000234 | CP197793.1:2832011–2833189 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW8Q_07355 | XZH74995.1 | OG0000785 | CP197793.1:1622592–1623011 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW8Q_15060 | XZH73489.1 | OG0001124 | CP197793.1:3243722–3246319 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW8Q_01770 | XZH73928.1 | OG0001228 | CP197793.1:399176–400699 + | L-lactate permease [Clostridium perfringens] |
| crtACSW8Q_13705 | XZH73249.1 | OG0001394 | CP197793.1:2971016–2971798 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW8Q_00720 | XZH73734.1 | OG0001639 | CP197793.1:157173–157949 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.