Assembly
ASM5225000v1
BioProject PRJNA1294857 · BioSample SAMN50128541
GENOME-RESOLVED EVIDENCE
GCA_052250005.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4301528 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW8U_06815 | XZH78310.1 | OG0000061 | CP197717.1:1541866–1543218 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW8U_00675 | XZH77134.1 | OG0000131 | CP197717.1:152166–153119 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW8U_06805 | XZH78308.1 | OG0000212 | CP197717.1:1540941–1541432 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW8U_13020 | XZH76674.1 | OG0000229 | CP197717.1:2893378–2894226 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW8U_12305 | XZH76561.1 | OG0000234 | CP197717.1:2763297–2764475 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW8U_06810 | XZH78309.1 | OG0000785 | CP197717.1:1541435–1541854 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW8U_14320 | XZH76903.1 | OG0001124 | CP197717.1:3150643–3153240 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW8U_01705 | XZH77325.1 | OG0001228 | CP197717.1:396899–398422 + | L-lactate permease [Clostridium perfringens] |
| crtACSW8U_13040 | XZH76678.1 | OG0001394 | CP197717.1:2897353–2898135 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW8U_00635 | XZH77126.1 | OG0001639 | CP197717.1:141515–142291 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.