Assembly
ASM5225002v1
BioProject PRJNA1294857 · BioSample SAMN50128539
GENOME-RESOLVED EVIDENCE
GCA_052250025.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 4308280 bp · GC 28.500%
Completeness —% · contamination —%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSW8S_12365 | XZH84480.1 | OG0000061 | CP197725.1:2715441–2716793 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSW8S_03465 | XZH85662.1 | OG0000131 | CP197725.1:814875–815828 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSW8S_12375 | XZH84482.1 | OG0000212 | CP197725.1:2717227–2717718 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSW8S_06135 | XZH86122.1 | OG0000229 | CP197725.1:1357681–1358529 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSW8S_06850 | XZH86236.1 | OG0000234 | CP197725.1:1487432–1488610 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSW8S_12370 | XZH84481.1 | OG0000785 | CP197725.1:2716805–2717224 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSW8S_04835 | XZH85892.1 | OG0001124 | CP197725.1:1098667–1101264 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSW8S_02435 | XZH85470.1 | OG0001228 | CP197725.1:569572–571095 - | L-lactate permease [Clostridium perfringens] |
| crtACSW8S_06115 | XZH86118.1 | OG0001394 | CP197725.1:1353772–1354554 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSW8S_03505 | XZH85670.1 | OG0001639 | CP197725.1:825703–826479 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.