Assembly
ASM5225003v1
BioProject PRJNA1294857 · BioSample SAMN50128758
GENOME-RESOLVED EVIDENCE
GCA_052250035.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3650034 bp · GC 28.000%
Completeness 96.680% · contamination 5.760%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXEV_06835 | XZH90304.1 | OG0000061 | CP197695.1:1557852–1559204 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXEV_00675 | XZH89123.1 | OG0000131 | CP197695.1:152314–153267 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXEV_06825 | XZH90302.1 | OG0000212 | CP197695.1:1556927–1557418 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXEV_13420 | XZH88641.1 | OG0000229 | CP197695.1:2995498–2996346 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXEV_12575 | XZH88501.1 | OG0000234 | CP197695.1:2838445–2839623 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXEV_06830 | XZH90303.1 | OG0000785 | CP197695.1:1557421–1557840 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXEV_14720 | XZH88871.1 | OG0001124 | CP197695.1:3252288–3254885 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXEV_01765 | XZH89323.1 | OG0001228 | CP197695.1:408910–410433 + | L-lactate permease [Clostridium perfringens] |
| crtACSXEV_13440 | XZH88645.1 | OG0001394 | CP197695.1:2999473–3000255 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXEV_00635 | XZH89115.1 | OG0001639 | CP197695.1:141713–142489 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.