Assembly
ASM5225004v1
BioProject PRJNA1294857 · BioSample SAMN50128754
GENOME-RESOLVED EVIDENCE
GCA_052250045.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3431868 bp · GC 28.500%
Completeness 96.580% · contamination 3.920%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXER_08195 | XZH90790.1 | OG0000061 | CP198884.1:1747086–1748438 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXER_14475 | XZH91988.1 | OG0000131 | CP198884.1:3165507–3166460 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXER_08205 | XZH90792.1 | OG0000212 | CP198884.1:1748872–1749363 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXER_02085 | XZH92464.1 | OG0000229 | CP198884.1:406689–407537 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXER_02695 | XZH92559.1 | OG0000234 | CP198884.1:522522–523700 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXER_08200 | XZH90791.1 | OG0000785 | CP198884.1:1748450–1748869 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXER_00790 | XZH92235.1 | OG0001124 | CP198884.1:146988–149585 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXER_13340 | XZH91775.1 | OG0001228 | CP198884.1:2905341–2906864 - | L-lactate permease [Clostridium perfringens] |
| crtACSXER_02065 | XZH92460.1 | OG0001394 | CP198884.1:402780–403562 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXER_14535 | XZH92000.1 | OG0001639 | CP198884.1:3181163–3181939 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.