Assembly
ASM5225005v1
BioProject PRJNA1294857 · BioSample SAMN50128733
GENOME-RESOLVED EVIDENCE
GCA_052250055.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3496417 bp · GC 28.500%
Completeness 97.770% · contamination 3.620%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXD6_06185 | XZH96301.1 | OG0000061 | CP198793.1:1332648–1334000 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXD6_12810 | XZH94640.1 | OG0000131 | CP198793.1:2818954–2819907 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXD6_06195 | XZH96303.1 | OG0000212 | CP198793.1:1334434–1334925 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXD6_15480 | XZH95099.1 | OG0000229 | CP198793.1:3363331–3364179 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXD6_00555 | XZH95218.1 | OG0000234 | CP198793.1:90570–91748 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXD6_06190 | XZH96302.1 | OG0000785 | CP198793.1:1334012–1334431 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXD6_14175 | XZH94869.1 | OG0001124 | CP198793.1:3103048–3105645 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXD6_11740 | XZH94444.1 | OG0001228 | CP198793.1:2569702–2571225 - | L-lactate permease [Clostridium perfringens] |
| crtACSXD6_15460 | XZH95095.1 | OG0001394 | CP198793.1:3359422–3360204 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXD6_12850 | XZH94648.1 | OG0001639 | CP198793.1:2829787–2830563 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.