Assembly
ASM5225006v1
BioProject PRJNA1294857 · BioSample SAMN50128747
GENOME-RESOLVED EVIDENCE
GCA_052250065.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3662647 bp · GC 28.000%
Completeness 98.400% · contamination 6.140%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXEK_10295 | XZH97281.1 | OG0000061 | CP198833.1:2243822–2245174 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXEK_04275 | XZH98998.1 | OG0000131 | CP198833.1:860506–861459 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXEK_10285 | XZH97279.1 | OG0000212 | CP198833.1:2242897–2243388 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXEK_01450 | XZH98508.1 | OG0000229 | CP198833.1:292261–293109 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXEK_00755 | XZH98398.1 | OG0000234 | CP198833.1:163266–164444 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXEK_10290 | XZH97280.1 | OG0000785 | CP198833.1:2243391–2243810 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXEK_02750 | XZH98737.1 | OG0001124 | CP198833.1:549727–552324 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXEK_05480 | XZH99220.1 | OG0001228 | CP198833.1:1131869–1133392 + | L-lactate permease [Clostridium perfringens] |
| crtACSXEK_01470 | XZH98512.1 | OG0001394 | CP198833.1:296236–297018 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXEK_04235 | XZH98990.1 | OG0001639 | CP198833.1:849851–850627 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.