Assembly
ASM5225031v1
BioProject PRJNA1294857 · BioSample SAMN50128766
GENOME-RESOLVED EVIDENCE
GCA_052250315.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3422246 bp · GC 28.500%
Completeness 96.110% · contamination 3.390%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXE3_08085 | XZI00162.1 | OG0000061 | CP197597.1:1717771–1719123 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXE3_14300 | XZI01351.1 | OG0000131 | CP197597.1:3127947–3128900 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXE3_08095 | XZI00164.1 | OG0000212 | CP197597.1:1719557–1720048 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXE3_02015 | XZI01837.1 | OG0000229 | CP197597.1:390703–391551 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXE3_02625 | XZI01931.1 | OG0000234 | CP197597.1:506519–507697 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXE3_08090 | XZI00163.1 | OG0000785 | CP197597.1:1719135–1719554 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXE3_00710 | XZI01607.1 | OG0001124 | CP197597.1:130669–133266 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXE3_13125 | XZI01131.1 | OG0001228 | CP197597.1:2857761–2859284 - | L-lactate permease [Clostridium perfringens] |
| crtACSXE3_01995 | XZI01833.1 | OG0001394 | CP197597.1:386794–387576 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXE3_14340 | XZI01359.1 | OG0001639 | CP197597.1:3138778–3139554 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.