Assembly
ASM5225032v1
BioProject PRJNA1294857 · BioSample SAMN50128764
GENOME-RESOLVED EVIDENCE
GCA_052250325.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3463973 bp · GC 28.500%
Completeness 97.300% · contamination 3.150%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXE1_08230 | XZI03226.1 | OG0000061 | CP197613.1:1752849–1754201 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXE1_14110 | XZI04346.1 | OG0000131 | CP197613.1:3100638–3101591 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXE1_08240 | XZI03228.1 | OG0000212 | CP197613.1:1754635–1755126 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXE1_02190 | XZI04843.1 | OG0000229 | CP197613.1:433496–434344 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXE1_02790 | XZI04936.1 | OG0000234 | CP197613.1:548248–549426 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXE1_08235 | XZI03227.1 | OG0000785 | CP197613.1:1754213–1754632 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXE1_00795 | XZI04595.1 | OG0001124 | CP197613.1:152634–155231 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXE1_13000 | XZI04143.1 | OG0001228 | CP197613.1:2849868–2851391 - | L-lactate permease [Clostridium perfringens] |
| crtACSXE1_02170 | XZI04839.1 | OG0001394 | CP197613.1:429587–430369 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXE1_14150 | XZI04354.1 | OG0001639 | CP197613.1:3111469–3112245 - | enoyl-CoA hydratase-related protein [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.