Assembly
ASM5225041v1
BioProject PRJNA1294857 · BioSample SAMN50128757
GENOME-RESOLVED EVIDENCE
GCA_052250415.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3390600 bp · GC 28.500%
Completeness 96.850% · contamination 3.240%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXEU_06935 | XZI08922.1 | OG0000061 | CP197706.1:1574069–1575421 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXEU_00690 | XZI07726.1 | OG0000131 | CP197706.1:156586–157539 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXEU_06925 | XZI08920.1 | OG0000212 | CP197706.1:1573144–1573635 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXEU_13040 | XZI07247.1 | OG0000229 | CP197706.1:2914890–2915738 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXEU_12430 | XZI07153.1 | OG0000234 | CP197706.1:2798727–2799905 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXEU_06930 | XZI08921.1 | OG0000785 | CP197706.1:1573638–1574057 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXEU_14335 | XZI07477.1 | OG0001124 | CP197706.1:3172387–3174984 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXEU_01820 | XZI07938.1 | OG0001228 | CP197706.1:416048–417571 + | L-lactate permease [Clostridium perfringens] |
| crtACSXEU_13060 | XZI07251.1 | OG0001394 | CP197706.1:2918865–2919647 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXEU_00630 | XZI07714.1 | OG0001639 | CP197706.1:141107–141883 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.