Assembly
ASM5225042v1
BioProject PRJNA1294857 · BioSample SAMN50128756
GENOME-RESOLVED EVIDENCE
GCA_052250425.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3380844 bp · GC 28.500%
Completeness 96.850% · contamination 3.190%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXET_09765 | XZI09497.1 | OG0000061 | CP198880.1:2109811–2111163 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXET_00900 | XZI10696.1 | OG0000131 | CP198880.1:208676–209629 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXET_09775 | XZI09499.1 | OG0000212 | CP198880.1:2111597–2112088 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXET_03660 | XZI11175.1 | OG0000229 | CP198880.1:771566–772414 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXET_04270 | XZI11269.1 | OG0000234 | CP198880.1:887399–888577 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXET_09770 | XZI09498.1 | OG0000785 | CP198880.1:2111175–2111594 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXET_02370 | XZI10945.1 | OG0001124 | CP198880.1:512318–514915 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXET_14890 | XZI10484.1 | OG0001228 | CP198880.1:3267660–3269183 - | L-lactate permease [Clostridium perfringens] |
| crtACSXET_03640 | XZI11171.1 | OG0001394 | CP198880.1:767657–768439 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXET_00960 | XZI10708.1 | OG0001639 | CP198880.1:224332–225108 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.