Assembly
ASM5225043v1
BioProject PRJNA1294857 · BioSample SAMN50128755
GENOME-RESOLVED EVIDENCE
GCA_052250435.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3381386 bp · GC 28.500%
Completeness 96.850% · contamination 3.190%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXES_08545 | XZI12205.1 | OG0000061 | CP198882.1:1821268–1822620 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXES_14800 | XZI13403.1 | OG0000131 | CP198882.1:3239150–3240103 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXES_08555 | XZI12207.1 | OG0000212 | CP198882.1:1823054–1823545 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXES_02450 | XZI13880.1 | OG0000229 | CP198882.1:483025–483873 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXES_03060 | XZI13974.1 | OG0000234 | CP198882.1:598858–600036 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXES_08550 | XZI12206.1 | OG0000785 | CP198882.1:1822632–1823051 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXES_01160 | XZI13651.1 | OG0001124 | CP198882.1:223777–226374 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXES_13670 | XZI13191.1 | OG0001228 | CP198882.1:2979118–2980641 - | L-lactate permease [Clostridium perfringens] |
| crtACSXES_02430 | XZI13876.1 | OG0001394 | CP198882.1:479116–479898 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXES_14860 | XZI13414.1 | OG0001639 | CP198882.1:3254806–3255582 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.