Assembly
ASM5225044v1
BioProject PRJNA1294857 · BioSample SAMN50128760
GENOME-RESOLVED EVIDENCE
GCA_052250445.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3605769 bp · GC 28.000%
Completeness 96.680% · contamination 5.930%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXEX_13640 | XZI16083.1 | OG0000061 | CP197671.1:2967998–2969350 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXEX_07470 | XZI17785.1 | OG0000131 | CP197671.1:1562460–1563413 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXEX_13630 | XZI16081.1 | OG0000212 | CP197671.1:2967073–2967564 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXEX_04695 | XZI17306.1 | OG0000229 | CP197671.1:997303–998151 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXEX_03850 | XZI17166.1 | OG0000234 | CP197671.1:840250–841428 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXEX_13635 | XZI16082.1 | OG0000785 | CP197671.1:2967567–2967986 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXEX_05995 | XZI17536.1 | OG0001124 | CP197671.1:1254093–1256690 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXEX_08565 | XZI15105.1 | OG0001228 | CP197671.1:1819056–1820579 + | L-lactate permease [Clostridium perfringens] |
| crtACSXEX_04715 | XZI17310.1 | OG0001394 | CP197671.1:1001278–1002060 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXEX_07430 | XZI17777.1 | OG0001639 | CP197671.1:1551859–1552635 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.