Assembly
ASM5225051v1
BioProject PRJNA1294857 · BioSample SAMN50128765
GENOME-RESOLVED EVIDENCE
GCA_052250515.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3492156 bp · GC 28.500%
Completeness 97.310% · contamination 3.830%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXE2_05870 | XZI24029.1 | OG0000061 | CP197601.1:1358121–1359473 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXE2_00280 | XZI22973.1 | OG0000131 | CP197601.1:69008–69961 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXE2_05860 | XZI24027.1 | OG0000212 | CP197601.1:1357196–1357687 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXE2_12395 | XZI22477.1 | OG0000229 | CP197601.1:2744142–2744990 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXE2_11785 | XZI22386.1 | OG0000234 | CP197601.1:2627393–2628571 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXE2_05865 | XZI24028.1 | OG0000785 | CP197601.1:1357690–1358109 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXE2_13710 | XZI22710.1 | OG0001124 | CP197601.1:3004051–3006648 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXE2_01345 | XZI23169.1 | OG0001228 | CP197601.1:312875–314398 + | L-lactate permease [Clostridium perfringens] |
| crtACSXE2_12415 | XZI22481.1 | OG0001394 | CP197601.1:2748117–2748899 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXE2_00235 | XZI22964.1 | OG0001639 | CP197601.1:58367–59143 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.