Assembly
ASM5225066v1
BioProject PRJNA1294857 · BioSample SAMN50128761
GENOME-RESOLVED EVIDENCE
GCA_052250665.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3694458 bp · GC 28.000%
Completeness 96.680% · contamination 5.740%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXEY_08700 | XZI24672.1 | OG0000061 | CP197657.1:1849843–1851195 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXEY_14870 | XZI25849.1 | OG0000131 | CP197657.1:3255780–3256733 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXEY_08710 | XZI24674.1 | OG0000212 | CP197657.1:1851629–1852120 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXEY_02110 | XZI26329.1 | OG0000229 | CP197657.1:412701–413549 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXEY_02955 | XZI26469.1 | OG0000234 | CP197657.1:569424–570602 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXEY_08705 | XZI24673.1 | OG0000785 | CP197657.1:1851207–1851626 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXEY_00810 | XZI26098.1 | OG0001124 | CP197657.1:154162–156759 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXEY_13775 | XZI25648.1 | OG0001228 | CP197657.1:2998614–3000137 - | L-lactate permease [Clostridium perfringens] |
| crtACSXEY_02090 | XZI26325.1 | OG0001394 | CP197657.1:408792–409574 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXEY_14910 | XZI25857.1 | OG0001639 | CP197657.1:3266558–3267334 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.