Assembly
ASM5225067v1
BioProject PRJNA1294857 · BioSample SAMN50128759
GENOME-RESOLVED EVIDENCE
GCA_052250675.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3671119 bp · GC 28.000%
Completeness 96.680% · contamination 6.350%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXEW_08695 | XZI27883.1 | OG0000061 | CP197682.1:1849796–1851148 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXEW_14855 | XZI29062.1 | OG0000131 | CP197682.1:3255733–3256686 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXEW_08705 | XZI27885.1 | OG0000212 | CP197682.1:1851582–1852073 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXEW_02110 | XZI29543.1 | OG0000229 | CP197682.1:412654–413502 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXEW_02955 | XZI29683.1 | OG0000234 | CP197682.1:569377–570555 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXEW_08700 | XZI27884.1 | OG0000785 | CP197682.1:1851160–1851579 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXEW_00810 | XZI29313.1 | OG0001124 | CP197682.1:154115–156712 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXEW_13765 | XZI28863.1 | OG0001228 | CP197682.1:2998567–3000090 - | L-lactate permease [Clostridium perfringens] |
| crtACSXEW_02090 | XZI29539.1 | OG0001394 | CP197682.1:408745–409527 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXEW_14895 | XZI29070.1 | OG0001639 | CP197682.1:3266511–3267287 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.