Assembly
ASM5225070v1
BioProject PRJNA1294857 · BioSample SAMN50128767
GENOME-RESOLVED EVIDENCE
GCA_052250705.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3374003 bp · GC 28.500%
Completeness 97.130% · contamination 2.630%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXE4_03140 | XZI36499.1 | OG0000061 | CP197595.1:679061–680413 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXE4_12130 | XZI35300.1 | OG0000131 | CP197595.1:2592710–2593663 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXE4_03130 | XZI36497.1 | OG0000212 | CP197595.1:678136–678627 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXE4_09470 | XZI34844.1 | OG0000229 | CP197595.1:2051962–2052810 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXE4_08870 | XZI34752.1 | OG0000234 | CP197595.1:1936167–1937345 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXE4_03135 | XZI36498.1 | OG0000785 | CP197595.1:678630–679049 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXE4_10770 | XZI35074.1 | OG0001124 | CP197595.1:2309671–2312268 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXE4_13205 | XZI35499.1 | OG0001228 | CP197595.1:2837751–2839274 + | L-lactate permease [Clostridium perfringens] |
| crtACSXE4_09490 | XZI34848.1 | OG0001394 | CP197595.1:2055937–2056719 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXE4_12090 | XZI35292.1 | OG0001639 | CP197595.1:2582064–2582840 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.