Assembly
ASM5225075v1
BioProject PRJNA1294857 · BioSample SAMN50128743
GENOME-RESOLVED EVIDENCE
GCA_052250755.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3493958 bp · GC 28.500%
Completeness 98.890% · contamination 3.270%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXEG_06720 | XZI40183.1 | OG0000061 | CP198803.1:1546280–1547632 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXEG_00670 | XZI39025.1 | OG0000131 | CP198803.1:151448–152401 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXEG_06710 | XZI40181.1 | OG0000212 | CP198803.1:1545355–1545846 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXEG_13020 | XZI38538.1 | OG0000229 | CP198803.1:2898240–2899088 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXEG_12410 | XZI38446.1 | OG0000234 | CP198803.1:2780239–2781417 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXEG_06715 | XZI40182.1 | OG0000785 | CP198803.1:1545849–1546268 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXEG_14320 | XZI38767.1 | OG0001124 | CP198803.1:3155623–3158220 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXEG_01860 | XZI39246.1 | OG0001228 | CP198803.1:425010–426533 + | L-lactate permease [Clostridium perfringens] |
| crtACSXEG_13040 | XZI38542.1 | OG0001394 | CP198803.1:2902215–2902997 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXEG_00630 | XZI39017.1 | OG0001639 | CP198803.1:140796–141572 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.