Assembly
ASM5225082v1
BioProject PRJNA1294857 · BioSample SAMN50128736
GENOME-RESOLVED EVIDENCE
GCA_052250825.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3542003 bp · GC 28.000%
Completeness 97.190% · contamination 4.570%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXD9_07180 | XZI49590.1 | OG0000061 | CP198776.1:1637835–1639187 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXD9_00885 | XZI48385.1 | OG0000131 | CP198776.1:191360–192313 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXD9_07170 | XZI49588.1 | OG0000212 | CP198776.1:1636910–1637401 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXD9_13435 | XZI47868.1 | OG0000229 | CP198776.1:2987564–2988412 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXD9_12730 | XZI47754.1 | OG0000234 | CP198776.1:2856177–2857355 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXD9_07175 | XZI49589.1 | OG0000785 | CP198776.1:1637404–1637823 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXD9_14740 | XZI48100.1 | OG0001124 | CP198776.1:3246912–3249509 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXD9_02000 | XZI48591.1 | OG0001228 | CP198776.1:449295–450818 + | L-lactate permease [Clostridium perfringens] |
| crtACSXD9_13455 | XZI47872.1 | OG0001394 | CP198776.1:2991539–2992321 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXD9_00630 | XZI48337.1 | OG0001639 | CP198776.1:140948–141724 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.