Assembly
ASM5225085v1
BioProject PRJNA1294857 · BioSample SAMN50128730
GENOME-RESOLVED EVIDENCE
GCA_052250855.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3883341 bp · GC 28.000%
Completeness 96.030% · contamination 9.000%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXD3_12185 | XZI50658.1 | OG0000061 | CP198735.1:2644610–2645962 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXD3_02950 | XZI51922.1 | OG0000131 | CP198735.1:693720–694673 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXD3_12195 | XZI50660.1 | OG0000212 | CP198735.1:2646396–2646887 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXD3_05805 | XZI52417.1 | OG0000229 | CP198735.1:1269807–1270655 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXD3_06735 | XZI52575.1 | OG0000234 | CP198735.1:1438860–1440038 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXD3_12190 | XZI50659.1 | OG0000785 | CP198735.1:2645974–2646393 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXD3_04430 | XZI52172.1 | OG0001124 | CP198735.1:994097–996694 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXD3_01890 | XZI51724.1 | OG0001228 | CP198735.1:447740–449263 - | L-lactate permease [Clostridium perfringens] |
| crtACSXD3_05785 | XZI52413.1 | OG0001394 | CP198735.1:1265898–1266680 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXD3_02990 | XZI51929.1 | OG0001639 | CP198735.1:704552–705328 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.