Assembly
ASM5225086v1
BioProject PRJNA1294857 · BioSample SAMN50128734
GENOME-RESOLVED EVIDENCE
GCA_052250865.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3535568 bp · GC 28.500%
Completeness 96.970% · contamination 4.930%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXD7_08775 | XZI53444.1 | OG0000061 | CP198787.1:1837597–1838949 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXD7_15235 | XZI54683.1 | OG0000131 | CP198787.1:3294582–3295535 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXD7_08785 | XZI53446.1 | OG0000212 | CP198787.1:1839383–1839874 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXD7_02285 | XZI55195.1 | OG0000229 | CP198787.1:443756–444604 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXD7_02895 | XZI55287.1 | OG0000234 | CP198787.1:559531–560709 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXD7_08780 | XZI53445.1 | OG0000785 | CP198787.1:1838961–1839380 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXD7_00925 | XZI54951.1 | OG0001124 | CP198787.1:168849–171446 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXD7_14145 | XZI54481.1 | OG0001228 | CP198787.1:3042226–3043749 - | L-lactate permease [Clostridium perfringens] |
| crtACSXD7_02265 | XZI55191.1 | OG0001394 | CP198787.1:439847–440629 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXD7_15275 | XZI54691.1 | OG0001639 | CP198787.1:3305410–3306186 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.