Assembly
ASM5225091v1
BioProject PRJNA1294857 · BioSample SAMN50128719
GENOME-RESOLVED EVIDENCE
GCA_052250915.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3316672 bp · GC 28.500%
Completeness 97.480% · contamination 3.980%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXDS_06655 | XZI59142.1 | OG0000061 | CP198760.1:1524446–1525798 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXDS_00670 | XZI57983.1 | OG0000131 | CP198760.1:151676–152629 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXDS_06645 | XZI59140.1 | OG0000212 | CP198760.1:1523521–1524012 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXDS_12755 | XZI57523.1 | OG0000229 | CP198760.1:2846425–2847273 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXDS_12045 | XZI57408.1 | OG0000234 | CP198760.1:2715109–2716287 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXDS_06650 | XZI59141.1 | OG0000785 | CP198760.1:1524015–1524434 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXDS_14055 | XZI57753.1 | OG0001124 | CP198760.1:3104152–3106749 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXDS_01730 | XZI58180.1 | OG0001228 | CP198760.1:394068–395591 + | L-lactate permease [Clostridium perfringens] |
| crtACSXDS_12775 | XZI57527.1 | OG0001394 | CP198760.1:2850400–2851182 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXDS_00630 | XZI57975.1 | OG0001639 | CP198760.1:141023–141799 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.