Assembly
ASM5225092v1
BioProject PRJNA1294857 · BioSample SAMN50128732
GENOME-RESOLVED EVIDENCE
GCA_052250925.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3572447 bp · GC 28.500%
Completeness 97.770% · contamination 4.350%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXD5_15345 | XZI60711.1 | OG0000061 | CP198797.1:3337955–3339307 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXD5_08720 | XZI59440.1 | OG0000131 | CP198797.1:1852048–1853001 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXD5_15335 | XZI60709.1 | OG0000212 | CP198797.1:3337030–3337521 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXD5_06050 | XZI61918.1 | OG0000229 | CP198797.1:1307776–1308624 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXD5_05310 | XZI61800.1 | OG0000234 | CP198797.1:1172825–1174003 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXD5_15340 | XZI60710.1 | OG0000785 | CP198797.1:3337524–3337943 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXD5_07355 | XZI62149.1 | OG0001124 | CP198797.1:1566310–1568907 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXD5_09790 | XZI59638.1 | OG0001228 | CP198797.1:2100730–2102253 + | L-lactate permease [Clostridium perfringens] |
| crtACSXD5_06070 | XZI61922.1 | OG0001394 | CP198797.1:1311751–1312533 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXD5_08680 | XZI59432.1 | OG0001639 | CP198797.1:1841392–1842168 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.