Assembly
ASM5225093v1
BioProject PRJNA1294857 · BioSample SAMN50128731
GENOME-RESOLVED EVIDENCE
GCA_052250935.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3917772 bp · GC 28.000%
Completeness 96.030% · contamination 9.060%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXD4_07335 | XZI65396.1 | OG0000061 | CP198724.1:1635066–1636418 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXD4_00780 | XZI64142.1 | OG0000131 | CP198724.1:166675–167628 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXD4_07325 | XZI65394.1 | OG0000212 | CP198724.1:1634141–1634632 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXD4_13720 | XZI63645.1 | OG0000229 | CP198724.1:3010373–3011221 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXD4_12790 | XZI63488.1 | OG0000234 | CP198724.1:2840990–2842168 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXD4_07330 | XZI65395.1 | OG0000785 | CP198724.1:1634635–1635054 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXD4_15095 | XZI63890.1 | OG0001124 | CP198724.1:3284334–3286931 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXD4_01840 | XZI64340.1 | OG0001228 | CP198724.1:412085–413608 + | L-lactate permease [Clostridium perfringens] |
| crtACSXD4_13740 | XZI63649.1 | OG0001394 | CP198724.1:3014348–3015130 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXD4_00740 | XZI64134.1 | OG0001639 | CP198724.1:156020–156796 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.