Assembly
ASM5225094v1
BioProject PRJNA1294857 · BioSample SAMN50128745
GENOME-RESOLVED EVIDENCE
GCA_052250945.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3506670 bp · GC 28.500%
Completeness 97.340% · contamination 4.720%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXEI_01750 | XZI67865.1 | OG0000061 | CP198853.1:380059–381411 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXEI_08005 | XZI66153.1 | OG0000131 | CP198853.1:1812135–1813088 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXEI_01760 | XZI67867.1 | OG0000212 | CP198853.1:381845–382336 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXEI_10795 | XZI66636.1 | OG0000229 | CP198853.1:2373765–2374613 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXEI_11535 | XZI66755.1 | OG0000234 | CP198853.1:2508569–2509747 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXEI_01755 | XZI67866.1 | OG0000785 | CP198853.1:381423–381842 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXEI_09475 | XZI66403.1 | OG0001124 | CP198853.1:2109124–2111721 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXEI_06810 | XZI68848.1 | OG0001228 | CP198853.1:1533940–1535463 - | L-lactate permease [Clostridium perfringens] |
| crtACSXEI_10775 | XZI66632.1 | OG0001394 | CP198853.1:2369856–2370638 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXEI_08045 | XZI66161.1 | OG0001639 | CP198853.1:1822965–1823741 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.