Assembly
ASM5225096v1
BioProject PRJNA1294857 · BioSample SAMN50128741
GENOME-RESOLVED EVIDENCE
GCA_052250965.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3465763 bp · GC 28.500%
Completeness 98.890% · contamination 3.250%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXEE_06725 | XZI71862.1 | OG0000061 | CP198813.1:1546348–1547700 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXEE_00670 | XZI70704.1 | OG0000131 | CP198813.1:151516–152469 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXEE_06715 | XZI71860.1 | OG0000212 | CP198813.1:1545423–1545914 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXEE_13025 | XZI70217.1 | OG0000229 | CP198813.1:2898308–2899156 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXEE_12415 | XZI70123.1 | OG0000234 | CP198813.1:2780307–2781485 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXEE_06720 | XZI71861.1 | OG0000785 | CP198813.1:1545917–1546336 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXEE_14325 | XZI70446.1 | OG0001124 | CP198813.1:3155691–3158288 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXEE_01860 | XZI70925.1 | OG0001228 | CP198813.1:425078–426601 + | L-lactate permease [Clostridium perfringens] |
| crtACSXEE_13045 | XZI70221.1 | OG0001394 | CP198813.1:2902283–2903065 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXEE_00630 | XZI70696.1 | OG0001639 | CP198813.1:140864–141640 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.