Assembly
ASM5225097v1
BioProject PRJNA1294857 · BioSample SAMN50128749
GENOME-RESOLVED EVIDENCE
GCA_052250975.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3445438 bp · GC 28.500%
Completeness 97.210% · contamination 7.660%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXEM_06955 | XZI75030.1 | OG0000061 | CP198869.1:1591507–1592859 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXEM_00830 | XZI73839.1 | OG0000131 | CP198869.1:178087–179040 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXEM_06945 | XZI75028.1 | OG0000212 | CP198869.1:1590582–1591073 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXEM_13455 | XZI73347.1 | OG0000229 | CP198869.1:2989870–2990718 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXEM_12775 | XZI73238.1 | OG0000234 | CP198869.1:2863266–2864444 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXEM_06950 | XZI75029.1 | OG0000785 | CP198869.1:1591076–1591495 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXEM_14760 | XZI73577.1 | OG0001124 | CP198869.1:3246952–3249549 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXEM_01895 | XZI74038.1 | OG0001228 | CP198869.1:426228–427751 + | L-lactate permease [Clostridium perfringens] |
| rnfAACSXEM_06905 | XZI75021.1 | OG0001328 | CP198869.1:1583938–1584513 + | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACSXEM_13475 | XZI73351.1 | OG0001394 | CP198869.1:2993844–2994626 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXEM_00760 | XZI73825.1 | OG0001639 | CP198869.1:162310–163086 + | enoyl-CoA hydratase-related protein [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.