Assembly
ASM5225101v1
BioProject PRJNA1294857 · BioSample SAMN50128740
GENOME-RESOLVED EVIDENCE
GCA_052251015.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3802040 bp · GC 28.000%
Completeness 97.430% · contamination 7.270%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 1/6 | 0.167 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| rnfA | Rnf complex subunit A | 1 |
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXED_09075 | XZI78384.1 | OG0000061 | CP198819.1:1889694–1891046 - | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXED_15230 | XZI79562.1 | OG0000131 | CP198819.1:3312754–3313707 + | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXED_09085 | XZI78386.1 | OG0000212 | CP198819.1:1891480–1891971 - | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXED_02305 | XZI80076.1 | OG0000229 | CP198819.1:446719–447567 + | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXED_03165 | XZI80219.1 | OG0000234 | CP198819.1:606186–607364 + | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXED_09080 | XZI78385.1 | OG0000785 | CP198819.1:1891058–1891477 - | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXED_00920 | XZI79831.1 | OG0001124 | CP198819.1:169427–172024 + | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXED_14215 | XZI79373.1 | OG0001228 | CP198819.1:3074951–3076474 - | L-lactate permease [Clostridium perfringens] |
| rnfAACSXED_09125 | XZI78394.1 | OG0001328 | CP198819.1:1898037–1898612 - | electron transport complex protein RnfA [Clostridium perfringens] |
| crtACSXED_02285 | XZI80072.1 | OG0001394 | CP198819.1:442810–443592 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXED_15270 | XZI79570.1 | OG0001639 | CP198819.1:3323589–3324365 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.