Assembly
ASM5225102v1
BioProject PRJNA1294857 · BioSample SAMN50128735
GENOME-RESOLVED EVIDENCE
GCA_052251025.1
Clostridium perfringens · Complete Genome
View versioned NCBI assembly →
Quality metadata
Genome size 3544252 bp · GC 28.000%
Completeness 97.300% · contamination 5.470%
Pathway marker completeness
| Module | Markers | Fraction | Call |
|---|---|---|---|
| bcd_etf_module | 0/3 | 0.000 | Partial/absent |
| ethanol_entry_support | 1/1 | 1.000 | Complete marker set |
| fatty_acid_biosynthesis_core | 3/8 | 0.375 | Partial/absent |
| lactate_entry_support | 2/2 | 1.000 | Complete marker set |
| reverse_beta_oxidation_core | 3/4 | 0.750 | Partial/absent |
| rnf_complex | 0/6 | 0.000 | Partial/absent |
Detected markers
| Marker | Function | Copies |
|---|---|---|
| adhE | bifunctional acetaldehyde-CoA/alcohol dehydrogenase | 1 |
| accB | acetyl-CoA carboxylase biotin carboxyl carrier protein | 1 |
| accC | acetyl-CoA carboxylase biotin carboxylase | 1 |
| fabZ | 3-hydroxyacyl-ACP dehydratase | 1 |
| lctP | L-lactate permease | 1 |
| ldh | L-lactate dehydrogenase | 1 |
| crt | crotonase/enoyl-CoA hydratase | 2 |
| hbd | 3-hydroxybutyryl-CoA dehydrogenase | 1 |
| thl | acetyl-CoA acetyltransferase/thiolase | 1 |
Profile-HMM marker predictions
Approved candidates and review records are genomic predictions, not evidence of expression or MCFA production. Excluded matches remain visible for audit.
| Marker / protein | Confidence | Review status | Score / coverage | Supporting evidence |
|---|---|---|---|---|
| No profile-HMM predictions for this assembly. | ||||
Protein-level evidence
| Gene | Protein | Orthogroup | Coordinates | Annotation |
|---|---|---|---|---|
| accCACSXD8_04545 | XZI83934.1 | OG0000061 | CP198781.1:1035496–1036848 + | acetyl-CoA carboxylase biotin carboxylase subunit [Clostridium perfringens] |
| ldhACSXD8_13765 | XZI82715.1 | OG0000131 | CP198781.1:2983818–2984771 - | L-lactate dehydrogenase [Clostridium perfringens] |
| accBACSXD8_04535 | XZI83932.1 | OG0000212 | CP198781.1:1034571–1035062 + | acetyl-CoA carboxylase biotin carboxyl carrier protein [Clostridium perfringens] |
| hbdACSXD8_10800 | XZI82201.1 | OG0000229 | CP198781.1:2385226–2386074 - | 3-hydroxybutyryl-CoA dehydrogenase [Clostridium perfringens] |
| thlACSXD8_10095 | XZI82089.1 | OG0000234 | CP198781.1:2253839–2255017 - | acetyl-CoA C-acetyltransferase [Clostridium perfringens] |
| fabZACSXD8_04540 | XZI83933.1 | OG0000785 | CP198781.1:1035065–1035484 + | 3-hydroxyacyl-ACP dehydratase FabZ [Clostridium perfringens] |
| adhEACSXD8_12105 | XZI82432.1 | OG0001124 | CP198781.1:2644574–2647171 - | bifunctional acetaldehyde-CoA/alcohol dehydrogenase [Clostridium perfringens] |
| lctPACSXD8_14880 | XZI82923.1 | OG0001228 | CP198781.1:3241755–3243278 + | L-lactate permease [Clostridium perfringens] |
| crtACSXD8_10820 | XZI82205.1 | OG0001394 | CP198781.1:2389201–2389983 - | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
| crtACSXD8_13510 | XZI82667.1 | OG0001639 | CP198781.1:2933406–2934182 + | short-chain-enoyl-CoA hydratase [Clostridium perfringens] |
These are genomic annotation predictions. Experimental activity, expression and metabolite production require separate evidence.